A New Species of Finch in the Galapagos: So What?


Since the first reports of the origin of a new species of finch on the island of Daphne Major in the Galapagos archipelago appeared, there has been a flood of questions about just what exactly it was that Peter and Rosemary Grant observed, and how their observations relate to the larger question of macroevolution. As many evolutionary biologists (including me) anticipated, creationists and intelligent design ("ID") supporters have moved the goalposts, arguing that they have always accepted that speciation occurs, but that it does not necessarily mean anything for macroevolution, especially if one defines "macroevolution" as the origin of higher taxa (i.e. taxonomic categories above the level of species). So, what did the Grants observe, and how are their observations related to the larger question of the origin of higher taxa (i.e. macroevolution)?

The answer is that this long-term research project has provided direct evidence for the initial stages of macroevolution in the field. To be precise, what is at issue in the research reported by the Grants is what is known as “secondary contact”. This is what happens after a sub-population has become reproductively isolated from the population from which it was derived. According to Theodosius Dobzhansky and Ernst Mayr (two of the founders of the “modern evolutionary synthesis”), speciation is the result of genetic isolation resulting from geographic isolation: the members of two geographically separated populations of organisms no longer interbreed, and therefore genetic differences between the two populations accumulate over time.

This process, commonly known as allopatric speciation, can be considered to consist of six discrete, successive stages:

1) Vicariance: A subpopulation (in this case, a couple of finches) becomes geographically isolated (on Isla Daphne Major) from its former panmictic conspecifics (i.e. the species Geospiza fortis on Isla Santa Cruz, a neighboring island);

2) Divergence: The genomes of the members of the vicariant subpopulation diverge from the genomes of the members of the panmictic source population as the result of various genetic mechanisms (for a list of such mechanisms, click here);

3) Reproductive Isolation: The reproductive anatomy, physiology, and behavior of the members of the vicariant subpopulation diverge from the reproductive anatomy, physiology, and behavior of the members of the original source population, resulting in reproductive isolation and (eventually...at least sometimes) reproductive incompatibility;

4) Secondary Contact: Successful hybridization between members of the diverging sub-population and the original source population decreases in frequency as the result of pre-zygotic and post-zygotic isolating mechanisms (for more, click here);

5) Reinforcement: Hybrids continue to decrease in frequency as non-hybrids increase in frequency as the result of microevolutionary mechanisms (i.e. mutation,natural selection, gene flow, genetic drift, and inbreeding depression), resulting in reinforcement of reproductive isolation and species boundaries; and

6) Maintenance: Species incompatibility is continuously reinforced via pre-zygotic and post-zygotic isolating mechanisms, resulting in continued genotypic and phenotypic divergence.

This is why Alfred Russell Wallace entitled his paper (which he mailed to Darwin in April 1858), “On the Tendency for Varieties to Depart Indefinitely from the Original Type”.

Note that none of these stages is absolutely defined; rather, they integrade in what Darwin characterized as an “insensible series”. Also note that stages 4 through 6 can be condensed into one stage (i.e. “reinforcement”), in which reproductive incompatibility increases steadily over time. Finally, some evolutionary biologists (most notably C. H. Waddington, Mary Jane West-Eberhard, Eva Jablonka and Marion Lamb) have proposed that stages 2 and 3 probably happen in reverse order (a process known as genetic assimilation).

This is the theoretical model; what actual empirical studies have shown is that diverging phylogenetic lines frequently become reintegrated, separating and then re-integrating more than once. Sometimes they become sufficiently reinforced that they remain separate and diverge continuously, and sometimes they “collapse” back into a single, panmictic “species”.

The importance of all of this to the theory of macroevolution is that divergence is divergence: phylogenetic divergence via reproductive isolation is macroevolution. Speciation is simply the first stage in the origin of all higher taxa.

Therefore, what is ultimately at issue between evolutionary biologists and creationists (including most ID supporters) is not speciation per se nor the mechanisms by which it occurs or is reinforced, but rather whether there are “natural” limits to the degree of divergence that can take place as a result of the mechanisms that comprise the “engines of variation”.

Despite much posturing on both sides, this is not a question that can be answered via pure theoretical (i.e. mathematical) speculation. However compelling a theoretical model may appear, it must be tested empirically to see if it conforms to the evidence from nature. This is what evolutionary biologists do all the time, and what ID theorists seem either unable or unwilling to do. Until this situation changes (if it ever does), no reputable empirical scientist anywhere will ever take ID seriously.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

The Longest Running Failed Prediction in Creationism


AUTHOR: G.R. Morton

SOURCE: Answers in Science

COMMENTARY: Allen MacNeill

First, today is the 150th anniversary of the original publication of Charles Darwin's Origin of Species. So many people have written about this event that it would be superfluous for me to write about it here. However, some of what has been written about the Origin lately, mostly by creationists and supporters of "intelligent design", is that Darwin's theory of evolution by natural selection is "crumbling" and will soon be "dead".

Admittedly, I have written recently that the "modern evolutionary synthesis" is dead (see here for more), but in doing so I have taken pains to point out that the theory of evolution itself is most assuredly not dead. On the contrary, it is very much alive. Indeed, it has never been more vigorous than it is today.

But that's not what the creationists are saying. What they're saying (or trying to say) is that the whole concept of evolution itself is dead: the Earth and everything on it was created a relatively short time ago, and even if life on Earth has changed (a little), all of that change has been guided by the deity of the Abrahamic religions (Judaism, Christianity, Islam, Mormonism, etc.) Indeed, just this morning a new podcast was launched at the website of the Discovery Institute, in which neo-Paleyist and ID creationist John West asserts once again that "Darwinism is dead".

Is this news? And is it new? How long have creationists been predicting the demise of Darwin's theory of evolution? Apparently, they've been doing so since a few decades before Darwin published it. G. R. Morton has compiled a short list of quote from creationists predicting the impending overthrow of the theory of evolution (you can read it here). He introduces his anthology of science denialism with this:

In recent reading of [Dr. William] Dembski and other ID proponents I saw them make a claim which has been made for over 40 years. This claim is one that the young-earthers have been making. The claim is that evolution (or major supporting concepts for it) is increasingly being abandoned by scientists, or is about to fall. This claim has many forms and has been made for over 162 years. This is a compilation of the claims over time. The purpose of this compilation is two-fold. First, it is to show that the claim has been made for a long, long time. Secondly, it is to show that entire careers have passed without seeing any of this movement away from evolution. Third, it is to show that the creationists are merely making these statements for the purpose of keeping hope alive that they are making progress towards their goal. In point of fact, no such progress is being made as anyone who has watched this area for the last 40 years can testify. The claim is false as history and present-day events show, yet that doesn't stop anyone wanting to sell books from making that claim.

Morton's quotations from creationists begins with a quote dating to 1825, 34 years before Darwin published the Origin of Species. Apparently, what many historians have asserted was true: that the idea of evolution was "in the air" in the mid-19th century, and that Darwin simply codified and provided evidence for an idea that was already becoming generally well-known and at least partially accepted. The fact that Alfred Russell Wallace came up with the same mechanism that Darwin did for descent with modification — natural selection — is further evidence for the idea that evolution was "in the air" at the time.

It still is, and even moreso. Not only has the theory of evolution not "crumbled", it is currently undergoing its most rapid expansion since 1859. Darwin's original theory was limited strictly to biological evolution, but now his theory is being extended into astrophysics, geology, economics, psychology, sociology, and even literature and art history. It is this tremendous success that upsets the opponents of Darwin's theory, and that impels them (in the face of overwhelming evidence to the contrary) that the most widely accepted, most generally applicable, and most analytically powerful theory in all of science is on its way out.

In other words (and true to their creationist roots), they stare reality in the face and deny it.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

Comfortable Creationists Wimp Out at Cornell


Many people have recently heard about how creationist and televangelist Ray Comfort has been planning to distribute 170,000 copies of Charles Darwin's Origin of Species at the 100 top colleges and universities in America.

Well, the appointed day (19 November) for Ray's distribution of the Origin came and went, but apparently no creationists showed up at Cornell to pass out Ray's "abridged" copy of the Origin of Species with Ray's laughably mendacious introduction. I really wanted to get a copy, eagerly pressed into my grasp by the hot little hands of a freshly scrubbed creationist, but after checking every likely location — from Ho Plaza in front of the Straight (where there were a few empty folding tables, sitting forlornly in the rain) to the plaza between Olin and Uris libraries (where a few damp smokers contemplated "The Song of the Vowels") to Trillium (where Cornell's elite meet to eat) to Mann Library (the second largest agriculture and biology library in the world...where is the first, exactly?) to Appell Commons (where you can work up a sweat before downing your stir fry)...nada, nobody, zip, just grey sky and freezing rain. And so my quest for another artifact from the culture wars went unsatisfied...

Apparently, Ray got worried that people like me would make things "unComfortable" for his minions, so he secretly ordered them to go out a day early. But, this is the Age of Twitter, and so a lot of Godless Evilutionists were out in force on Wednesday...but, no Comfortable creationists then either. Looks like I picked up that bunch of bananas for nothing — *sigh*

By the way, Ray Comfort has apparently been making a career out of lying lately, asserting that his version of the Origin would be passed out at Cornell yesterday, and that his bastardized version would be available in its entirety. Although I didn't get my copy, I have been informed by people at other academic institutions who did that, on the contrary, he's apparently cut out precisely those chapters that have proven most inconvenient for creationists in the past. And, he's added a fifty-page "introduction" that's filled with laughably inaccurate so-called "arguments" against the content of Darwin's masterpiece.

Furthermore, his apparently false claim that he was printing 170,000 copies of his version of the Origin was apparently intended to push his version to the top of Amazon.com's search results for the Origin of Species, where members of the uninformed public who were interested in reading Darwin's masterpiece during this bicentennial year (it's the 200th anniversary of Darwin's birth and the 150th anniversary of the first publication of the Origin of Species) would innocently buy his bastardized version with his mendacious introduction. A clever public relations gambit — gaming Amazon.com's popularity algorithm — but I guess he forgot about the reviewer's comments at Amazon, where his lying and propaganda techniques and public relations tricks have been exposed by people more interested in the truth than making money by shilling for Jesus (who would have been horrified by Ray's tactics, and probably by his theology as well).

So, why did Ray's minions wimp out at Cornell? Maybe because Cornell is well-known for being the Ivy League university most dedicated to the principles of modern science, including evolutionary biology — we've got the best department of ecology and evolutionary biology in the world, and Cornellians (including our presidents) have been well-known for speaking out against bad science since the beginning.

Or maybe because Ray's followers were "discomfited" by our ever-present November drizzle...

...whatever.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

The Modern Synthesis is Dead - Long Live the Evolving Synthesis!


It has been almost exactly a century and a half since Darwin's Origin of Species was first published, and half a century since the conference at the University of Chicago where the "triumph" of the "modern evolutionary synthesis" was celebrated. So, isn't it a little odd that some well-respected scientists and historians of science are proclaiming in this celebratory year that the modern evolutionary synthesis is dead?

For example, Eugene Koonin, senior investigator at the National Center for Biotechnology Information, National Library of Medicine, and National Institutes of Health in Bethesda, Maryland, has published two essays on the current status of the "modern evolutionary synthesis":
The Origin at 150: Is a new evolutionary synthesis in sight?
Trends in Genetics, 25(11), November 2009, pp. 473-475.

Abstract: The 200th anniversary of Charles Darwin and the 150th jubilee of the On the Origin of Species could prompt a new look at evolutionary biology. The 1959 Origin centennial was marked by the consolidation of the modern synthesis. The edifice of the modern synthesis has crumbled, apparently, beyond repair. The hallmark of the Darwinian discourse of 2009 is the plurality of evolutionary processes and patterns. Nevertheless, glimpses of a new synthesis might be discernible in emerging universals of evolution.

and
Darwinian evolution in the light of genomics.
Nucleic Acids Research, 37(4), 2009, pp. 1011-1034.

ABSTRACT: Comparative genomics and systems biology offer unprecedented opportunities for testing central tenets of evolutionary biology formulated by Darwin in the Origin of Species in 1859 and expanded in the Modern Synthesis 100 years later. Evolutionary-genomic studies show that natural selection is only one of the forces that shape genome evolution and is not quantitatively dominant, whereas non-adaptive processes are much more prominent than previously suspected. Major contributions of horizontal gene transfer and diverse selfish genetic elements to genome evolution undermine the Tree of Life concept. An adequate depiction of evolution requires the more complex concept of a network or 'forest' of life. There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a nonadaptive consequence of evolution under weak purifying selection rather than an adaptation. Several universals of genome evolution were discovered including the invariant distributions of evolutionary rates among orthologous genes from diverse genomes and of paralogous gene family sizes, and the negative correlation between gene expression level and sequence evolution rate. Simple, non-adaptive models of evolution explain some of these universals, suggesting that a new synthesis of evolutionary biology might become feasible in a not so remote future.

A big deal, right? Well, not really. Will Provine and I have been saying that “the modern evolutionary synthesis is dead” for years. Indeed, Will Provine coined the phrase “the hardening of the synthesis” to describe the narrowing of focus in evolutionary theory during the first half of the 20th century to concepts entirely reducible to mathematical models, especially theoretical population genetics.

Ironically, Dr. John Sanford and Dr. William Dembski (among others in the ID camp) have not moved beyond this narrow focus on theoretical population genetics, and so have apparently missed the fact that evolutionary biology has evolved far beyond the narrow theoretical focus of the mid-20th century. Some ID supporters have also suggested that Dr. Koonin might be taking a “big career risk” in stating the obvious. I don't think so. On the contrary, what Dr. Koonin has pointed out is that evolutionary biology today is broader, more generally applicable, and less narrowly focused than at any time since the publication of the Origin of Species 150 years ago. Being an evolutionary biologist today is like being a physicist in 1905 — a whole new world of theoretical and practical empirical research is opening up, with new discoveries being made every day.

As just one example, Kyoto-prize-winning evolutionary biologists Peter and Rosemary Grant have reported on something that Darwin could only speculate about: the systematic empirical documentation of the “origin” of a new species (reported here yesterday). Creationists have of course moved the goalposts, arguing that they accepted all along that new species could arise from existing ones, it’s just microevolution, which of course everyone accepts. This, despite the fact that speciation has always been considered to be the first (and perhaps most important) stage in macroevolution, and that less than two decades ago creationists were confidently stating that “true” speciation had not only never been observed, it couldn’t ever be observed because it can’t happen.

Now the leaders of the ID movement — people like Dr. Michael Behe and Dr. William Dembski — publicly state that they fully accept that descent with modification from common ancestors (i.e. evolution) has happened, that microevolution (i.e. natural selection, sexual selection, and genetic drift) are also fully supported by the evidence, and that the “real” focus of disagreement is over the “engines of variation” that produce the raw material upon which the “engines of evolution” operate. They’ve come a long way, but they’ve missed the parade by a couple of decades. So it goes…

I would say that Dr. Koonin's essays on where evolutionary biology is today are quite close to the the mark. The concept of natural selection as the foundation of evolutionary change has been largely superseded, mostly through the work of Motoo Kimura, Tomoko Ohta, and others, who have shown both theoretically and empirically that natural selection has little or no effect on the vast majority of the genomes of most living organisms.

However, ID supporters should find this sea change in evolutionary biology to be cold comfort. The overall effect of the advances in our understanding of how genomes and phenotypes change over time has had the same effect on evolutionary theory that the rise of quantum mechanics had on classical physics. Einstein famously asserted that “God does not play dice”, but a century of physics research has shown him to be more wrong about how the universe works at the quantum level than ever.

The same is true for the “evolving synthesis”. Rather than revert to a neo-Paleyan paradigm (as proposed by Behe, Dembski, and their supporters), evolutionary biology has gone in the opposite direction, the same direction that quantum mechanics has taken. According to the “modern synthesis” of the last century, the genome was “homeostatic”, “organized”, and “regulated” primarily by natural selection. Sure there were purely random processes also going on (such as genetic drift), but most evolutionary change was both adaptive and coherent over time.

Here's what Dr. Koonin writes (see above):
"There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a nonadaptive consequence of evolution under weak purifying selection rather than an adaptation."

Kimura, Ohta, Jukes, and Crow dropped a monkey wrench into the "engine" at the heart of the modern synthesis — natural selection — and then Gould and Lewontin finished the job with their famous paper on “the spandrels of San Marco and the Panglossian paradigm”. The rise of evo-devo over the past two decades has laid the groundwork for a completely new and empirically testable theory of macroevolution, a theory that is currently facilitating exponential progress in our understanding of how major evolutionary transitions happen. And iconoclasts like Lynn Margulis, Eva Jablonka, Marian Lamb, Mary Jane West-Eberhard, and David Sloan Wilson are rapidly overturning our understanding of how evolutionary change happens at all levels, and how it is inherited.

So, as I have said many times before, when ID supporters set their sights on “neo-Darwinism” as a target for criticism, they set their sights on a model that has been all but abandoned. The carnival has moved on and ID supporters are fighting battles that evolutionary biologists left behind a half century and more ago.

And so, on this 150th anniversary of the publication of Darwin's Origin of Species, evolutionary biologists can raise a frosty glass and say


The modern synthesis is dead — long live the evolving synthesis!


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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

The Darwinian Revolution To Be Shown at Cornell


There will be a free public showing of The Darwinian Revolution video series at 4 PM on Tuesday 24 November 2009 in the large classroom (room 3330) of the Tatkon Center in Balch Hall. This presentation will take place on the 150th anniversary of the publication of Charles Darwin's Origin of Species, and is part of Cornell's celebration of the Darwin Bicentennial. The host of the video series, Cornell evolutionary biologist Allen MacNeill, will be on hand at the presentation to discuss the videos and answer questions about evolutionary biology in general, and about The Darwinian Revolution video series in particular.

The Darwinian Revolution is a series of six videos addressing the content and history of the theory of evolution. Produced by Cornell's CyberTower program and hosted by evolutionary biologist Allen MacNeill, the six-part series includes an overview of evolutionary biology, a history of the concept of evolution in western civilization, a brief consideration of Lamarck's theory of evolution via the inheritance of acquired characteristics, a detailed look at Darwin's theory of evolution by natural selection, a brief exploration of Mendel's theory of particulate inheritance and its role in the origins of the "modern evolutionary synthesis", and a look forward at the future prospects for evolutionary biology. The series was videotaped at the Museum of the Earth in Ithaca, New York, and features interviews with museum director and paleontologist Warren Allman and Cornell historian of science William Provine.

This public showing of The Darwinian Revolution is free and open to the general public. It is cosponsored by Cornell's CyberTower program, in cooperation with the Museum of the Earth and Cornell's Tatkon Center as part of this year's celebration of the 200th anniversary of the birth of Charles Darwin and the 150th anniversary of the publication of Darwin's Origin of Species.

The Darwinian Revolution video series can also be viewed online here. For more information about the video series, go here.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

A New Species of Finch may have Evolved in the Galapagos


AUTHOR: Daniel Cressey

SOURCE: Nature.com News

COMMENTARY: Allen MacNeill

As I have noted in several recent blogposts, Charles Darwin's Origin of Species was published 150 years ago this month. One of Darwin's crucial examples of descent with modification in the Origin was the evolutionary diversification of a group of finches now usually referred to as "Darwin's finches". In the Origin Darwin did not speculate as to how long this evolutionary diversification took place, except to suggest that it would require "the passage of long ages". However, in a private letter to one of his correspondents, Darwin suggested that it would take at least fifty years to see unambiguous effects of natural selection.

A recent publication in the Proceedings of the National Academy of Sciences lends empirical support to Darwin's suggestion. Peter and Rosemary Grant have been studying the finches of Daphne Major, a small island in the Galapagos archipelago since 1973. In PNAS, they have proposed that a population of finches on Daphne Major may be on the verge of becoming a new species of finch. Here's how their proposal was reported at Nature.com News:
"It was in 1981, that the Grants spotted an unusually heavy medium ground-finch (Geospiza fortis). At 29.7 grams, the male was more than 5 grams heavier than any they had seen on Daphne Major before. Genetic analysis showed that it probably came from the neighbouring island of Santa Cruz.

The Grants numbered the bird 5110 and followed it and all its known descendants over seven generations. Many of its descendants stuck out from the other G. fortis on Daphne Major: they had unusually shaped beaks and their songs differed from those of the other finches.

...

In the fourth generation, a severe drought hit the island and 5110's descendants were reduced to one male and one female — a brother and sister. From then on the immigrant lineage isolated itself, breeding with no other G. fortis on the island....

"No study of this sort has been done before, and it shows one way in which speciation can get started," say the Grants from Japan, where they are receiving the Kyoto Prize for basic science for their life work."

Several further points from the Grants' report are significant. Many evolutionary biologists (including Tijs Goldschmidt) have speculated that sexual selection may be a significant cause of evolutionary diversification, including the origin of new species as the result of female choice. It appears that sexual selection has played an important part in the differentiation of the incipient species of finch on Daphne Major:
"The fact that 5110's descendants haven't mixed could be because they differ from the natives. The Grants note that the descendants have a differently shaped beak from those native to Daphne Major. As finch beaks are vital in identifying potential mates, this could serve to keep them reproductively isolated.

5110's offspring also have the avian equivalent of a strange accent. These finches learn their songs from their father, and the Grants suggest that 5110 sang the songs from his birth home of Santa Cruz then modified his come-hither ballad by roughly copying the Daphne Major birds'. This imperfect copying, they suggest, has over time acted as a barrier to interbreeding.

Also, the Grants' research has illustrated an important point concerning Darwinian speciation. As Darwin pointed out in the Origin, the distinction between varieties, subspecies, and species are "entirely arbitrary", and ultimately depend on reproductive isolation:
"The Grant's aren't yet ready to call 5110's lineage a new species, a term fraught with difficulty for evolutionary biologists. "There is no non-arbitrary answer to the question of how many generations should elapse before we declare the reproductively isolated lineage to be a new species," they say. "For the present it is functioning as a [separate] species because its members are breeding only with each other."

The Grants think there is only a small chance that 5110's descendants will remain isolated long enough to speciate. If they do, the new species will have to be named: "When discussing these birds we call them 'big birds'," the Grants say. "That could be translated into Latin."

According to the biological species concept, since 5110's descendants are not interbreeding with the other finch species on Daphne Major, they should already be considered to be a separate species. If at some point in the future they do interbreed with the other species of finches, this would not violate their status as a distinct species, any more than the hybridization between blue-winged warblers (Vermivora pinus) and golden-winged warblers (Vermivora chrysoptera) indicates that these two species are not "genuine" biological species.

Finally, the observation that this incipient species of finch resulted from the consanquineous mating of a pair of full siblings lends support to my proposal that speciation can be facilitated by first degree inbreeding. Here's what I wrote about this proposal on Thanksgiving in 2006:
"Wouldn't [the genetic rearrangements usually accompany reproductive isolation] have to occur within at least two members- one male, one female- of the same population in order for it to have any chance of getting passed on? And therefore, wouldn't this make such genetic rearrangements difficult, if not impossible to pass on?"

To which I answered:

No. All that would need to happen to make this possible would be for two first-degree relatives carrying the genetic rearrangement to mate and have offspring. First degree relatives (i.e. parents and offspring or full siblings) can easily have the same chromosomal mutation (i.e. a fusion, fission, translocation, or inversion), as they would inherit it from a single parent. If they were to mate with each other (a not uncommon event among non-humans...and even among some humans), they would be able to produce fertile offspring carrying the same chromosomal mutation.

Yes, it is true that first degree mating carries with it the possibility of reinforcement of recessive lethal alleles. However, as many geneticists and evolutionary biologists have repeatedly pointed out, this is actually beneficial to the population within which such reinforcement happens, as the alleles are "purged" from the population as a result.

In other words, mating between first degree genetic relatives within a small, isolated population would have the effect of both removing deleterious alleles from the population and allowing chromosomal mutations to spread throughout the population, especially if such mutations were at all beneficial (although they would diffuse almost as well if they were selectively neutral, as would probably be the case given that no change in overall genetic information would have occurred).

Furthermore, the hypothesis that I have presented above squares very well with the currently prevailing theory of speciation: that of peripatric speciation, as first proposed by Ernst Mayr. According to Mayr's theory, speciation occurs most often in small, isolated populations on the periphery of large, panmictic populations. There is abundant natual history evidence that this is the case, especially in animals.

However, to my knowledge no one has yet proposed a mechanism explaining how peripatric speciation would come to be associated with the kinds of chromosomal changes that are commonly associated with reproductive isolation and speciation. My hypothesis – that first-degree inbreeding facilitates chromosomal speciation – is an attempt to reconcile those two observations.

In a large, panmictic population, selection would tend to eliminate individuals who mate with first-degree relatives as a result of decreased viability due to inbreeding depression and the increased frequency of expression of homozygous lethal alleles.

However, in very small, isolated populations individuals who occasionally mate with first degree relatives (i.e. "facultative first degree inbreeders") could easily have a selective advantage of individuals who avoid mating with first degree relatives (i.e. "obligate outbreeders").

Males in particular would tend to loose less as the result of mating with first degree relatives, as their parental investment in offspring is lower (i.e. they can waste gametes and even zygotes by mating with their first degree relatives, without significantly decreasing their reproductive success).

However, even females can cut their losses by mating with first degree relatives if the likely alternative is failure to mate at all due to unavailability of non-relatives. This would especially be the case in small, isolated populations, which are exactly the kind of populations in which speciation is most likely to occur.

The effects described above would be facilitated by increased genomic homogeneity, such as would result from genetic bottlenecks and founder effects. This is because close inbreeding intensifies genomic homogeneity and decreases genetic variation, especially in isolated populations with decreased gene flow from other populations.

This hypothesis – that first degree inbreeding facilitates chromosomal speciation – immediately suggests a series of predictions, all of which are empirically testable:

• The frequency of mating between first degree relatives should be inversely correlated with effective breeding population size. That is, the smaller the effective breeding population, the greater the frequency of mating between first degree relatives (i.e. “first degree inbreeding”).

• The increased frequency of “first degree inbreeding” in such populations should be more pronounced in males. That is, males should be more likely to attempt mating with first degree relatives, especially in small, isolated populations.

• The frequency of “chromolocal mutations” (that is, chromosomal fission/fusion/inversion/translocation mutations) should also be inversely correlated with effective breeding population size. That is, the smaller the effective breeding population, the greater the frequency of viable “chromolocal mutations.”

• Peripatric speciation events should be correlated with small population size, chromolocal mutations, and first degree inbreeding.

• Speciation resulting from chromolocal mutations should be much less common in large, panmictic populations.

• First degree inbreeding should also be much less common in large, panmictic populations.

• The success rate of artificial (i.e. facilitated/forced) first degree mating should be directly correlated with the degree of inbreeding. That is, the more inbred a population, the more successful artificial first degree inbreeding should be.

• Paleogenomic analysis should find close correlations between genetic bottlenecks, founder events, and peripatric speciation events and the frequency of chromolocal mutations and genetic homogeneity (resulting from first degree inbreeding).

• Relatively large changes in phenotype resulting from chromolocal effects should be more common in small, isolated populations.

• Speciation should be easier (and therefore more frequent) among asexually reproducing eukaryotes, such as plants and parthenogenic animals (among whom aneuploidy is largely irrelevant).

Let me stress two things about the foregoing:

• What I am suggesting is, at this stage, merely a hypothesis, but one that generates a series of immediately testable predictions.

• The hypothesis is, of course, based on the idea that incest (i.e. first degree inbreeding) is the most likely explanation for the diffusion of chromolocal mutations throughout small, isolated populations of animals. Let me stress as strongly as possible that I am NOT advocating incest, I am simply pointing out that first degree inbreeding would facilitate the kind of chromolocal mutations that are often correlated with species differences in animals. The same is also true for plants, of course, but in plants we don't call it "incest," we call it "self-pollination."

At the time that I proposed this hypothesis in November, 2006, I was a little perplexed at why no one has yet proposed this mechanism, given the fact that it is already used as the explanation for speciation in plants via polyploidy. The only explanation that seems reasonable to me is that most evolutionary biologists assume that animals will always avoid mating with first-degree relatives as a result of the increased frequency of inbreeding depression and expression of homozygous lethal alleles that result from it.

However, the Grants' observation of incipient speciation among the finches of Daphne Major, which was apparently facilitated by first-degree inbreeding lends support to my hypothesis.

And that's a reason for me to give thanks next week — Happy Thanksgiving, one and all!

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

The ID Cookie Crumbles...


During this year of celebration of Darwin and evolutionary biology, Intelligent Design (ID) supporters are fond of asserting that a branch of the biological sciences that currently accounts for over 100 regularly published journals (containing over 1000 peer-reviewed scientific reports) per year, over 1000 books published by reputable scientific publishers per year, and involving grant and foundation support amounting to several billion dollars per year is "crumbling", while ID, which accounts for not one peer-reviewed scientific journal and one peer-reviewed book (published over a decade ago) is replacing it.

I can go to Mann Library here at Cornell (the second largest library of biology in the world, comprising over a million books and bound periodicals) and find the equivalent of an entire floor devoted to evolutionary biology. I couldn't carry this month's issues of the various journals devoted to evolutionary biology to the loan desk, even if I used a large laundry basket and made several trips. I have a paltry selection of the most current books on the subject of evolution in my personal library: only 1000+ volumes published in the past ten years or so. If I had unlimited funds, I could buy ten times as many, and still could not keep up with the field.

Virtually every large university in the world has a department of ecology and evolutionary biology. Here at Cornell we have such a department, with almost two dozen professors and dozens of graduate students, and there are at least five other departments at Cornell who number evolutionary biologists among their members. There are almost half a dozen undergraduate and graduate organizations devoted to the scientific aspects of evolutionary biology at Cornell; branches of such societies are found worldwide.

By contrast, there are two tenured professors in the entire world who explicitly support ID, only one of whom is in a department devoted to an empirical science (the other teaches at a theological seminary). Neither of them is currently engaged in empirical research intended to validate ID.

Of the 35+ undergraduate IDEA clubs (a very liberal estimate) that were founded during the heyday of ID (the late 1990s and early 2000s), not one is currently maintaining a website or apparently meeting regularly. And according to Google Trends, interest by the news media in ID has fallen almost to zero since the Kitzmiller v. Dover trial in late 2005, while interest in evolutionary biology is at an all-time high and still increasing with no end in sight.

So, based on the empirical evidence, which is "crumbling", evolutionary biology or ID?

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen